Ahmed Taha

Machine Learning Researcher · Patent Technology Specialist at Proskauer Rose

Intrigued by the opportunity to apply his technical skills to the legal domain, Ahmed Taha transitioned from serving as a USPTO Patent Examiner to joining Proskauer Rose as a Technology Specialist. He is currently pursuing an M.S. in Computer Science at Columbia University, where his research focuses on agentic AI safety/alignment and computer vision for medical imaging.

Publications

First page of Stubborn or Sycophantic? paper

Stubborn or Sycophantic? GEPA-Evolved Prompts Under Pressure

Zhang, H., Chew, A., Soe, R., Taha, A., Li, R., Shah, A., & Chaudhary, M.

COLM 2026 Workshop on Efficient Reasoning · To appear · Cited by 0

TL;DREvaluates frozen anti-sycophancy system prompts under both valid corrections and misleading user pressure on SycoBench-600 across Phi-3-mini, Llama-3.1-8B, and Mistral-7B — showing that lower reversal rates can mask blanket answer inertia and that no prompt improves correction selectivity on all three models.

First page of SpineFairBench paper

SpineFairBench: A Counterfactual Benchmark for Auditing Demographic Sensitivity in Spinal Radiology VLM Reports

Taha, A., Taeha, A., & Ahmadzada, M.

Preprint, 2026 · Under review · Cited by 0

TL;DRPaired counterfactual benchmark that audits whether nine frozen vision-language models change their spinal-radiology reports when apparent age and sex are edited while target pathology is preserved — measurable recommendation drift in all nine, with management recommendations less stable than diagnostic-label overlap under the same demographic edit.

First page of MedInsider paper

MedInsider: A Benchmark for Documentation Integrity in Medical LLM Agents Under Institutional Pressure

Taha, A., Taeha, A., & Ahmadzada, M.

Preprint, 2026 · Under review · Cited by 0

TL;DRBenchmark and simulated EHR environment of 840 clinical scenarios in 420 matched pairs that tests whether medical LLM agents preserve documentation integrity when institutional context rewards shortcuts — across seven agents, task completion and documentation integrity diverge, and a pre-submission compliance check reduces discrepancies at a measurable cost to task completion (four-reviewer validation, Fleiss' κ = 0.905).

Browse the full publications page, with abstracts and citations →

Software

openfold-3 #344

Reworked per-run MSA output handling (#31) in OpenFold-3 so each run gets a unique temporary workspace: raw ColabFold records are saved as soon as the server response validates and OpenFold-formatted alignments once processing finishes, with new save_openfold_outputs, save_colabfold_outputs, and colabfold_output_dir settings, plus cleanup that can no longer delete explicit output directories.

openfold-3 #363

Moved OpenFold-3 inference intermediates (#342) out of /tmp and under <output_dir>/openfold3_intermediates, so temporary MSA and template files left by a crashed cluster job stay next to that job's outputs; directories created by a run are removed after normal completion or a handled error.

openfold-3 #384

Annotated OpenFold-3 inference configurations (#342), split out of #363 at a maintainer's request: typed InferenceDataModule.inference_config as InferenceJobConfig, narrowed InferenceExperimentRunner to InferenceExperimentConfig, and removed the 17 matching mypy-baseline.txt entries without changing runtime behavior.

openfold-3 #386

Added an optional residue_name for SMILES ligands (#323) in OpenFold-3 without changing the LIG# defaults: explicit names are trimmed, uppercased, and validated as ASCII alphanumeric, rejected on collisions with CCD, non-canonical, or standard polymer residue names, and carried into the SMILES component mapping, with full names written to mmCIF and three-character truncation documented for legacy PDB output.

openfold-3 #388

Fixed assigned C=C planarity on OpenFold-3's default inference path (#136): RDKit-assigned E/Z, non-aromatic sp2 C=C bonds are detected and their heavy-atom dihedrals pulled to the assigned cis/trans plane by a flat-bottom correction late in diffusion, with one more projection after rollout so the sampler cannot undo it, while queries without matching bonds are left unchanged; the worst targeted dihedral deviation fell from 101.13° to 15.01°.

Contact

Education

Work Experience

August 2026 - Present

Patent Technology Specialist

Proskauer Rose LLP · Full-time

Supporting patent prosecution and litigation.

August 2025 - May 2027

M.S. Computer Science (Machine Learning)

Columbia University, Fu Foundation School of Engineering and Applied Science

(Thesis track)

August 2025 - Present

Research Assistant

Columbia University · Part-time

Machine Learning Research

scholar.google.com/citations?user=FQ1XbKcAAAAJ

— Currently developing an RL policy to enhance AI-assisted tumor segmentation for radiation imaging under Dr. Yading Yuan
— Led the development of SpineFairBench and MedInsider; under review as first author

January 2025 - August 2026

Patent Examiner

U.S. Patent and Trademark Office · Full-time

Alexandria, Virginia, United States · On-site

GS-11 Patent Examiner · January 2026 - August 2026
— Evaluated 50+ machine learning and imaging patent applications, determining novelty and patentability through comprehensive prior art searches
— AU: 2613

GS-9 Patent Examiner · January 2025 - January 2026
— Awarded commendation letter from OPQA Director for office action quality

August 2024 - August 2026

M.S. Cybersecurity

Johns Hopkins University, Whiting School of Engineering

June 2020 - January 2025

Software Engineer

District Hut LLC

Led full-stack development projects generating over seven figures in revenue. Built patient-management systems, auto-dealer platforms, and restaurant applications. Registered trademark for company slogan.

2018 - 2024

B.S. Computer Science

California State University, Sacramento, College of Engineering and Computer Science

— Senior Capstone: Adapted Strength - Contributions Github
— D2 Wrestling Sports Club

August 2017 - February 2021

Sales Manager & Sales Specialist

Metro by T-Mobile

Sacramento, California, United States · On-site

Sales Manager · Full-time · August 2018 - February 2021

Sales Specialist · Part-time · August 2017 - August 2018

April 2016 - August 2017

Salesperson

Clothes4Bros · Part-time

Sacramento, California, United States · On-site